Package: Jacquard 1.0.2

Jacquard: Estimation of Jacquard's Genetic Identity Coefficients

Contains procedures to estimate the nine condensed Jacquard genetic identity coefficients (Jacquard, 1974) <doi:10.1007/978-3-642-88415-3> by constrained least squares (Graffelman et al., 2024) <doi:10.1101/2024.03.25.586682> and by the method of moments (Csuros, 2014) <doi:10.1016/j.tpb.2013.11.001>. These procedures require previous estimation of the allele frequencies. Functions are supplied that estimate relationship parameters that derive from the Jacquard coefficients, such as individual inbreeding coefficients and kinship coefficients.

Authors:Jan Graffelman [aut, cre]

Jacquard_1.0.2.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
Jacquard/json (API)

# Install 'Jacquard' in R:
install.packages('Jacquard', repos = c('https://jangraffelman.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • DeltaSimulatedPedigree - Estimates of Jacquard Coefficients for Simulated SNP data according to a Pedigree
  • GTC - Joint Genotype Counts according to a Pedigree
  • SimulatedPedigree - Simulated SNP data according to a Pedigree

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 161 downloads 10 exports 12 dependencies

Last updated from:93d7be3530. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK104
source / vignettesOK160
linux-release-x86_64OK116
macos-release-arm64OK118
macos-oldrel-arm64OK115
windows-develOK104
windows-releaseOK74
windows-oldrelOK82
wasm-releaseOK99

Exports:BoxplotDeltaBoxplotThetaCalculateMomCalculateThetaDeltaPairJacquard.clsJointGenotypeCountsmafvectorMakeMPairwiseList

Dependencies:codetoolsdigestfuturefuture.applyglobalslistenvnumDerivparallellyRcppRcppArmadilloRsolnptruncnorm

The Jacquard package

Jan Graffelman - Dpt. of Statistics, Universitat Politecnica de Catalunya; Dpt. of Biostatistics, University of Washington

Rendered fromJacquard.Rmdusingknitr::rmarkdownon May 14 2026.

Last update: 2024-09-18
Started: 2024-09-18