Package: Jacquard 1.0.2
Jacquard: Estimation of Jacquard's Genetic Identity Coefficients
Contains procedures to estimate the nine condensed Jacquard genetic identity coefficients (Jacquard, 1974) <doi:10.1007/978-3-642-88415-3> by constrained least squares (Graffelman et al., 2024) <doi:10.1101/2024.03.25.586682> and by the method of moments (Csuros, 2014) <doi:10.1016/j.tpb.2013.11.001>. These procedures require previous estimation of the allele frequencies. Functions are supplied that estimate relationship parameters that derive from the Jacquard coefficients, such as individual inbreeding coefficients and kinship coefficients.
Authors:
Jacquard_1.0.2.tar.gz
Jacquard_1.0.2.zip(r-4.5)Jacquard_1.0.2.zip(r-4.4)Jacquard_1.0.2.zip(r-4.3)
Jacquard_1.0.2.tgz(r-4.4-any)Jacquard_1.0.2.tgz(r-4.3-any)
Jacquard_1.0.2.tar.gz(r-4.5-noble)Jacquard_1.0.2.tar.gz(r-4.4-noble)
Jacquard_1.0.2.tgz(r-4.4-emscripten)Jacquard_1.0.2.tgz(r-4.3-emscripten)
Jacquard.pdf |Jacquard.html✨
Jacquard/json (API)
| # Install 'Jacquard' in R: |
| install.packages('Jacquard', repos = c('https://jangraffelman.r-universe.dev', 'https://cloud.r-project.org')) |
- DeltaSimulatedPedigree - Estimates of Jacquard Coefficients for Simulated SNP data according to a Pedigree
- GTC - Joint Genotype Counts according to a Pedigree
- SimulatedPedigree - Simulated SNP data according to a Pedigree
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:93d7be3530. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 17 2024 |
| R-4.5-win | OK | Nov 17 2024 |
| R-4.5-linux | OK | Nov 17 2024 |
| R-4.4-win | OK | Nov 17 2024 |
| R-4.4-mac | OK | Nov 17 2024 |
| R-4.3-win | OK | Nov 17 2024 |
| R-4.3-mac | OK | Nov 17 2024 |
Exports:BoxplotDeltaBoxplotThetaCalculateMomCalculateThetaDeltaPairJacquard.clsJointGenotypeCountsmafvectorMakeMPairwiseList
