Introduction | 1. Installation | 2. Logratio principal component analysis (LR-PCA) | 3. Logratio canonical correlation analysys (LR-CCO) | 3.1 Artificial data | 3.2 Canonical analysis of bentonites | 4. Logratio discriminant analysis (LR-LDA) | References
Package: ToolsForCoDa 1.1.0
ToolsForCoDa: Multivariate Tools for Compositional Data Analysis
Provides functions for multivariate analysis with compositional data. Includes a function for doing compositional canonical correlation analysis. This analysis requires two data matrices of compositions, which can be adequately transformed and used as entries in a specialized program for canonical correlation analysis, that is able to deal with singular covariance matrices. The methodology is described in Graffelman et al. (2017) <doi:10.1101/144584>. Functions for log-ratio principal component analysis with condition number computations and log-ratio discriminant analysis have been added to the package.
Authors:
ToolsForCoDa_1.1.0.tar.gz
ToolsForCoDa_1.1.0.zip(r-4.7)ToolsForCoDa_1.1.0.zip(r-4.6)ToolsForCoDa_1.1.0.zip(r-4.5)
ToolsForCoDa_1.1.0.tgz(r-4.6-any)ToolsForCoDa_1.1.0.tgz(r-4.5-any)
ToolsForCoDa_1.1.0.tar.gz(r-4.7-any)ToolsForCoDa_1.1.0.tar.gz(r-4.6-any)
ToolsForCoDa_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ToolsForCoDa/json (API)
| # Install 'ToolsForCoDa' in R: |
| install.packages('ToolsForCoDa', repos = c('https://jangraffelman.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- Artificial - Two sets of 3-part compositions
- bentonites - Isotopic and chemical compositions of bentonites
- PinotNoir - Chemical composition of Pinot Noir wines
- Tubb - Romano-British pottery oxides
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:118e968f78. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 135 | ||
| source / vignettes | OK | 160 | ||
| linux-release-x86_64 | OK | 124 | ||
| macos-release-arm64 | OK | 78 | ||
| macos-oldrel-arm64 | OK | 73 | ||
| windows-devel | OK | 76 | ||
| windows-release | OK | 79 | ||
| windows-oldrel | OK | 83 | ||
| wasm-release | OK | 107 |
Exports:canocovcenclrmatlargest.kappaslrccolrldalrpcaternaryplottr
Dependencies:calibratecliCorrelplotcorrplotcpp11farverggplot2gluegtableisobandlabelinglifecyclelseiMASSR6RColorBrewerrlangS7scalesvctrsviridisLitewithrxtable
